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Data released on May 04, 2017

Supporting data for "A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana"

Nowell, R, W; Elsworth, B; Oostra, V; Zwaan, B, J; Wheat, C, W; Saastamoinen, M; Saccheri, I, J; van’t-Hof, A, E; Wasik, B, R; Connahs, H; Aslam, M, L; Kumar, S; Challis, R, J; Monteiro, A; Brakefield, P, M; Blaxter, M (2017): Supporting data for "A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana" GigaScience Database. http://dx.doi.org/10.5524/100280 RIS BibTeX Text

The mycalesine butterfly Bicyclus anynana, the ‘Squinting bush brown’, is a model organism in the study of lepidopteran ecology, development and evolution. Here, we present a draft genome sequence for B. anynana to serve as a genomics resource for current and future studies of this important model species. Eight libraries with insert sizes ranging from 350 bp to 20 kb were constructed using DNA from an inbred female and sequenced using both Illumina and PacBio technology. 128 Gb raw Illumina data were filtered to 124 Gb and assembled to a final size of 475 Mb (~260X assembly coverage). Contigs were scaffolded using mate-pair, transcriptome and PacBio data into 10,800 sequences with an N50 of 638 kb (longest scaffold 5 Mb). The genome is comprised of 26% repetitive elements, and encodes a total of 22,642 predicted protein-coding genes. Recovery of a BUSCO set of core metazoan genes was almost complete (98%). Overall, these metrics compare well with other recently published lepidopteran genomes. We report a high-quality draft genome sequence for Bicyclus anynana. The genome assembly and annotated gene models are available at LepBase (http://ensembl.lepbase.org/index.html).

Contact Submitter

Related manuscripts:

doi:10.1093/gigascience/gix035

Additional information:

http://ensembl.lepbase.org/index.html

Accessions (data included in GigaDB):

BioProject: PRJEB8426

Accessions (data not in GigaDB):

BioProject: PRJNA376691

Genomic, Transcriptomic

http://gigadb.org/images/data/cropped/100280.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
ERS1469840110368 squinting bush brownBicyclus anynana Description:DNA extracted from female pupae for Il...
Environment (biome):terrestrial biome [ENVO:000004...
Environment (feature):savannah [ENVO:ENVO:00000261...
...
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ERS1469841110368 squinting bush brownBicyclus anynana Description:DNA extracted from female pupae for Il...
Environment (biome):terrestrial biome [ENVO:000004...
Environment (feature):savannah [ENVO:ENVO:00000261...
...
+
ERS1505521110368 squinting bush brownBicyclus anynana Description:DNA extracted from female pupae for Pa...
Environment (biome):terrestrial biome [ENVO:000004...
Environment (feature):savannah [ENVO:ENVO:00000261...
...
+
ERS947087110368 squinting bush brownBicyclus anynana Description:DNA extracted from female pupae for Il...
Environment (biome):terrestrial biome [ENVO:000004...
Environment (feature):savannah [ENVO:ENVO:00000261...
...
+
Displaying 1-4 of 4 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Coding sequenceFASTA7.04 MB2017-02-28
annotationGFF4.95 MB2017-02-28
protein sequenceFASTA4.7 MB2017-02-28
Genome sequenceFASTA127.93 MB2017-02-28
otherTAR27.75 MB2017-02-28
otherTAR1.03 MB2017-02-28
ReadmeTEXT2.07 KB2017-02-28
Repeat sequenceTAR397.38 MB2017-02-28
Displaying 1-8 of 8 File(s).

History:

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