Supporting data for "An expanded mammal mitogenome dataset from Southeast Asia"

Dataset type: Genomic
Data released on June 30, 2017

Salleh FM; Ramos-Madrigal J; Penaloza F; Liu S; Sinding MS; Patel RP; Martins R; Lenz D; Fickel J; Roos C; Shamsir MS; Azman MS; Lim BK; Rossiter SJ; Wilting A; Gilbert MTP (2017): Supporting data for "An expanded mammal mitogenome dataset from Southeast Asia" GigaScience Database.


Southeast (SE) Asia is one of the most biodiverse regions in the world and it holds approximately 20% of all mammal species. Despite this, the majority of SE Asia’s genetic diversity is still poorly characterised. The growing interest in using environmental DNA (eDNA) to assess and monitor SE Asian species, in particular threatened mammals - has created the urgent need to expand the available reference database of mitochondrial barcode and complete mitogenome sequences. We have partially addressed this need by generating 72 new mitogenome sequences reconstructed from DNA isolated from a range of historical and modern tissue samples.

Additional details

Read the peer-reviewed publication(s):

Mohd Salleh, F., Ramos-Madrigal, J., Peñaloza, F., Liu, S., Mikkel-Holger, S. S., Riddhi, P. P., … Gilbert, M. T. P. (2017). An expanded mammal mitogenome dataset from Southeast Asia. GigaScience, 6(8). doi:10.1093/gigascience/gix053

Related datasets:

doi:10.5524/100313 IsCitedBy doi:10.5524/100570

Additional information:

Accessions (data generated as part of this study):

SRA: PRJNA361218

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
23A8BC239545pigtail macaquepig-tailed macaqueMacaca nemestrina Description:not available
Alternative names:MNE
Common name:Southern pig-tailed macaque
4EC500B54600 Celebes crested macaqueMacaca nigra Description:not available
Alternative names:MNI
Common name:Black crested macaque
7228609122765silvered leaf monkeySilvery lutungTrachypithecus cristatus Description:not available
Alternative names:TCR
Common name:Silvered langur
81A4F641272115  Presbytis mitrata Description:not available
Alternative names:PMI
Common name:Mitred surili
941A685288029Hanuman langur Semnopithecus entellus Description:not available
Alternative names:SVE
Common name:Western purple-faced langur
968B6C371046096  Presbytis melalophos melalophos Description:not available
Alternative names:PME
Common name:Sumatra surili
A1CCF80890383 moor macaqueMacaca maura Description:not available
Alternative names:MMA
Common name:Moor macaque
A8A42277222416  Trachypithecus auratus Description:not available
Alternative names:TAU
Common name:East Javan ebony langur
AMNH 5468637029 leopard catPrionailurus bengalensis Description:not available
Alternative names:PBE
Common name:Leopard cat
AMNH 5555461455 Asiatic golden catCatopuma temminckii Description:not available
Alternative names:CTE
Common name:Asian golden cat
Displaying 1-10 of 70 Sample(s).

File NameSample IDData TypeFile FormatSizeRelease Date 
OtherFASTQ9.44 MB2017-06-22
OtherBAM7.57 MB2017-06-22
KY117535OtherBAM1.06 MB2017-06-22
KY117535OtherFASTQ562.9 MB2017-06-22
KY117536OtherBAM508.19 KB2017-06-22
KY117536OtherFASTQ237.99 MB2017-06-22
KY117537OtherFASTQ348.88 MB2017-06-22
KY117537OtherBAM441.51 KB2017-06-22
KY117538OtherFASTQ431.34 MB2017-06-22
KY117538OtherBAM1.15 MB2017-06-22
Displaying 1-10 of 137 File(s).
Funding body Awardee Award ID Comments
German Federal Ministry of Education and Research A Wilting BMBF FKZ:01LN1301A
Leibniz-Association J Fickel SAW-2013-IZW-2
Lundbeck Foundation MTP Gilbert R52-5062

Date Action
July 3, 2017 Dataset publish
July 11, 2017 External Link added :
October 2, 2017 Manuscript Link added : 10.1093/gigascience/gix053