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Data released on August 18, 2017

Genomic data of Pearl Millet (Pennisetum glaucum).

Liu, X; Shi, C; Varshney, R, K; Vigouroux, Y; Xu, X (2017): Genomic data of Pearl Millet (Pennisetum glaucum). GigaScience Database. http://dx.doi.org/10.5524/100192 RIS BibTeX Text

Pearl millet is a highly cross-pollinated diploid (2n=2x=14) C4 grass. It has high photosynthetic efficiency and biomass production potential. It is an important cereal cultivated as a staple food grain and source of straw for fodder and fuel in arid and semi-arid regions of sub-Saharan Africa and South Asia. It is necessary to explore the pearl millet’s genome data to reveal its genetic features and improve the production.
In our project, a pearl millet genotype Tift 23D2B1-P1-P5 was chosen for sequencing on Illumina HiSeq 2000 platform. Using SOAP denovo we assembled ~1.79 Gb of pearl millet genome with N50 884.95 kb (for scaffolds greater than 1kb). A total of 38,579 genes models, as well as genome repeats and non-coding RNA elements were estimated based on the genome sequences. The genomic data of pearl millet will provide more resources and empower pearl millet crop breeding.

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Read the peer-reviewed publication(s):

Varshney, R. K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., … Rathore, A. (2017). Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology, 35(10), 969–976. doi:10.1038/nbt.3943

Accessions (data included in GigaDB):

PROJECT: PRJNA294988
GENBANK: LKME00000000

Accessions (data not in GigaDB):

SRA: SRP063925

Keywords:

pearl millet genome sequencing genomic data 

Genomic

http://gigadb.org/images/data/cropped/100192.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Tift 23D2B1-P1-P54543bulrush millet Cenchrus americanus Alternative names:pearl millet
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
Data Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDData TypeFile FormatSizeRelease Date 
Tift 23D2B1-P1-P5OtherEXCEL0.19 KB2016-02-29
Tift 23D2B1-P1-P5MD5sumUNKNOWN0.22 KB2016-02-29
Tift 23D2B1-P1-P5MD5sumFASTA0.24 KB2016-02-29
Tift 23D2B1-P1-P5MD5sumUNKNOWN0.25 KB2016-02-29
Tift 23D2B1-P1-P5MD5sumTEXT0.28 KB2016-02-29
Tift 23D2B1-P1-P5MD5sumUNKNOWN0.29 KB2016-02-29
Tift 23D2B1-P1-P5MD5sumUNKNOWN0.3 KB2016-02-29
Tift 23D2B1-P1-P5OtherUNKNOWN0.85 KB2016-02-29
Tift 23D2B1-P1-P5ReadmeTEXT1.11 KB2016-02-29
Tift 23D2B1-P1-P5OtherUNKNOWN4.43 KB2016-02-29
Displaying 1-10 of 36 File(s).

History:

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